Hello @79848876,
welcome to this moderated community forum.
In the past, I have used Azure Stream Analytics reference data but did not encounter similar behavior.
I recommend creating an Azure support ticket .
One trick could be building a new Stream Analytics job from the ground up with the same logic.
This eliminates any dependencies on the initial migration.
If the response helped, do "Accept Answer". If it doesn't work, please let us know the progress. All community members with similar issues will benefit by doing so. Your contribution is highly appreciated.